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ZCurvesDataFrame
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The ZCurvesDataFrame class |
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ZGroupCurvesDataFrame
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The ZGroupCurvesDataFrame class |
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Zproject
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The Zproject class |
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Zresults
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The Zresults class |
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Zvariant
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The Zvariant class |
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check_names()
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A function check feature/group names. |
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check_path()
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A function to deal with potentially relative paths. |
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check_zonation()
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Check if Zonation is installed. |
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clean_str()
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Clean leading and trailing whitespaces from a given string. Additionally,
all occurrences of multiple whitespaces are replaced with a single
whitespace. |
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comp()
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Compare matrices in various ways. |
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copy_zvariant()
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Copy existing variant as a new Zvariant object. |
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correlation()
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Correlation between two matrices. |
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cost()
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Get cost data of a Z* object. |
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create_spp()
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Generate spp_file based on a directory of input rasters. |
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create_zproject()
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Create a new Zonation project on file system. |
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cross_jaccard()
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Calculate Jaccard coefficients bewteen all the RasterLayers within a single
RasterStack. |
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curves()
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Get curves results data of a Z* object. |
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decimalplaces()
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Find out the number of decimal places in a number. |
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ds_alpha()
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Calculate alpha value for distribution smoothing. |
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featurenames() `featurenames<-`()
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Feature names of Zonation variant. |
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features_info()
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Get the features info component of Zresults. |
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file_path_relative_to()
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Transform an absolute path to relative path in relation to given location |
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file_path_sans_ext()
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Re-implementation of file_path_sans_ext in tools. This
version can handle "." just before the file extenstion, unlike the original
implementation. |
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get_dat_param()
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Get a specified run setting parameter value |
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get_tutorialdir()
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Get the directory of Zonation tutorial. |
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get_variant()
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Get a specified variant in a Zonation project |
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groupnames() `groupnames<-`()
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Get group names for a class Zvariant instance. |
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groups() `groups<-`()
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Get group codes of a class Zvariant instance. |
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has_results()
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Check which results a Z* object has. |
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jaccard()
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Calculate the Jaccard coefficient. |
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leaf_tags()
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Find all the leaf tags in a potentially nested list. The generic form of a
list is tag = value; find all the tags in a list. |
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load_zproject()
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Load a Zonation project. |
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map_indexes()
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Map vector to actual column indexes. |
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names(<Zproject>)
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Names of variants in Zproject |
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nfeatures()
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Get the number of feature included in a Zonation variant |
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nvariants()
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Get the number of variants included in a Zonation project |
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opendir()
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Open the directory of a Zproject using the system file browser. |
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outdir()
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Get path to output directory. |
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parse_bat()
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Parse the content of a Zonation batch (bat) file and make OS specific
adjustments if needed. |
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performance()
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Get performance levels. |
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plot(<ZCurvesDataFrame>,<missing>)
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Plot Zonation performance curves for individual features. |
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plot(<ZGroupCurvesDataFrame>,<missing>)
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Plot Zonation performance curves for groups. |
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plot_hist()
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Create a ggplot2 histogram of a RasterLayer. |
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ppa_lsm()
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Get ppa.lsm results data of a Z* object. |
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print(<Zvariant>)
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Print Zvariant information. |
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rank_raster()
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Get Zonation result rank raster. |
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rank_rasters()
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Get Zonation result rank rasters of a project. |
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read_bat()
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Read Zonation-specific (MS Windows) batch file. |
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read_curves()
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Read in performance curves produced by Zonation. |
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read_dat()
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Read a dat file (Windows-style ini-file) for configuration information. |
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read_features_info()
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Read a features info file. |
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read_groups()
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Read a groups file. |
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read_grp_curves()
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Read in performance curves for grouped features produced by Zonation. |
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read_ppa_lsm()
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Read Zonation post-processing analysis (ppa) result file. |
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read_result_rasters()
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Read Zonation-specific raster result files. |
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read_spp()
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Read Zonation variant specific spp-file. |
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regroup_curves()
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Re-calculate group curves data. |
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require_package()
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Requires a given package and if not present installs and loads it. |
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results()
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Getter method for results (Zresults) in a class
Zvariant object. |
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run_bat()
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Try to run a given batch (bat) files. |
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save_zvariant()
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Saves the current state of an instance of Zvariant-class on
the file system. Zvariant object tracks the location of relevant
files, but the root path can be changed. If it is not changed, then the
current files can be overwritten. |
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selection_coverage()
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Intersection of two coverages. |
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set_dat_param()
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Set a specified run setting parameter value |
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show(<Zvariant>)
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Print Zvariant information. |
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sppdata() `sppdata<-`()
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Simple getter mehtod for spp data in a class Zvariantobject. |
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sppweights() `sppweights<-`()
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Get biodiversity feature weights of a Zonation variant |
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variants()
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Get all variants in a Zonation project |
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write_dat()
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Write a Zonation run configuration (dat) file. |
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zlegend()
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Get various Zonation legends |
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zparameters()
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Get all Zonation run configuration parameters. |